{"id":762,"date":"2025-11-14T06:00:00","date_gmt":"2025-11-14T06:00:00","guid":{"rendered":"https:\/\/tax2u.co.uk\/blog\/?p=762"},"modified":"2025-11-12T15:37:49","modified_gmt":"2025-11-12T15:37:49","slug":"combining-cis-and-paye-what-you-can-claim","status":"publish","type":"post","link":"https:\/\/tax2u.co.uk\/blog\/2025\/11\/14\/combining-cis-and-paye-what-you-can-claim\/","title":{"rendered":"Combining CIS and PAYE: What you can claim"},"content":{"rendered":"\n<h2 class=\"wp-block-heading\">Working under both CIS and PAYE? You\u2019re not alone.<\/h2>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">Plenty of tradespeople switch between being subcontractors and employees throughout the year or even at the same time. You might be <strong>on PAYE<\/strong> for one site but also working <strong>under CIS<\/strong> for another.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">It\u2019s a common setup in construction but when tax season hits, things can get confusing fast. Which system takes priority? What can you claim? And how do those CIS deductions and PAYE taxes play together when it\u2019s time to file?<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Let\u2019s clear that up.<\/p>\n\n\n\n<div style=\"height:30px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\">Quick refresher: CIS vs PAYE<\/h2>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>CIS (Construction Industry Scheme)<\/strong> applies to self-employed subcontractors. Contractors deduct 20% (or 30%) tax from your pay and send it to HMRC. You then claim it back later through your Self Assessment tax return.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>PAYE (Pay As You Earn)<\/strong> applies when you\u2019re employed. Your employer deducts income tax and National Insurance before paying you, so you\u2019re usually square with HMRC automatically.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">But what if you\u2019re in both systems? That\u2019s where the rules start to overlap.<\/p>\n\n\n\n<div style=\"height:30px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\">Can you be both CIS and PAYE?<\/h2>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">Yes and HMRC sees this all the time. You might:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Work part-time for a company as PAYE.<\/li>\n\n\n\n<li>Pick up subcontracting jobs elsewhere under CIS.<\/li>\n\n\n\n<li>Or run your own limited company that hires both employees and subcontractors.<\/li>\n<\/ul>\n\n\n\n<p class=\"wp-block-paragraph\">Each setup affects how you pay (and reclaim) tax.<\/p>\n\n\n\n<div style=\"height:30px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\">What you can claim under each system<\/h2>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">Here\u2019s the thing, being on both PAYE and CIS doesn\u2019t mean you can double-dip your expenses. HMRC is clear about this:<\/p>\n\n\n\n<div style=\"height:20px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h3 class=\"wp-block-heading\">Under PAYE<\/h3>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">You can only claim <strong>flat rate expenses (FRE)<\/strong> or specific work-related costs that aren\u2019t reimbursed by your employer and <em>only<\/em> if you\u2019re employed.<\/p>\n\n\n\n<div style=\"height:20px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h3 class=\"wp-block-heading\">Under CIS<\/h3>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">You can claim a wider range of <strong>business expenses<\/strong> like tools, travel, PPE, insurance, phone use, and more. These reduce your taxable income when you file your Self Assessment.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">So, if you\u2019re part PAYE and part CIS, you\u2019ll have two types of income but the expenses only apply to your <strong>self-employed (CIS) income<\/strong>.<\/p>\n\n\n\n<div style=\"height:30px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\">When you run a company with both CIS and PAYE<\/h2>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">If you\u2019re a <strong>limited company contractor<\/strong> paying subcontractors and employees, you\u2019re dealing with both schemes at once.<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">Here\u2019s how the claiming works:<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<ol class=\"wp-block-list\">\n<li>You register for both CIS and PAYE with HMRC.<\/li>\n\n\n\n<li>You deduct CIS tax from your subcontractors and pay PAYE\/NICs for your employees.<\/li>\n\n\n\n<li>You can <strong>set off<\/strong> the CIS tax you\u2019ve suffered (deducted from your own invoices) against your PAYE liabilities.<\/li>\n\n\n\n<li>If your CIS deductions are higher than your PAYE bill, you can claim a refund or carry the credit forward.<\/li>\n<\/ol>\n\n\n\n<p class=\"wp-block-paragraph\">That set-off system is what keeps your cash flow balanced.<\/p>\n\n\n\n<div style=\"height:20px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h3 class=\"wp-block-heading\">Example<\/h3>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">You receive \u00a310,000 from a contractor who deducts \u00a32,000 CIS tax.<br>You owe \u00a31,200 PAYE and NICs for your employees.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">You can set off \u00a31,200 from the \u00a32,000 CIS already paid to HMRC, and only \u00a3800 remains as a credit or refund claim.<\/p>\n\n\n\n<div style=\"height:30px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\">Why your records matter<\/h2>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">If you\u2019re working both <strong>PAYE and CIS<\/strong>, keeping your paperwork in order is key. HMRC will look at your records to make sure you\u2019ve paid the right amount of tax and to confirm what you can claim back.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Here\u2019s what you\u2019ll need to keep tidy:<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>All CIS payment and deduction statements<\/strong> from contractors (these show how much tax was taken off your pay).<\/li>\n\n\n\n<li><strong>Payslips and P60s<\/strong> from your PAYE jobs, this proves how much tax you\u2019ve already paid as an employee.<\/li>\n\n\n\n<li><strong>Receipts and invoices<\/strong> for any expenses linked to your self-employed work.<\/li>\n\n\n\n<li><strong>Bank statements<\/strong> showing both PAYE wages and CIS income.<\/li>\n<\/ul>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">Keeping everything organised means your accountant (or HMRC) can quickly separate what relates to PAYE and what belongs to your CIS self-employment, which save time and avoiding refund delays.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Using digital bookkeeping (like <strong><a href=\"https:\/\/www.tax2u.co.uk\/services\/book-keeping\/step-1\" data-type=\"link\" data-id=\"https:\/\/www.tax2u.co.uk\/services\/book-keeping\/step-1\">Tax2u Bookkeeping<\/a><\/strong>) helps you automatically track both sides and stay MTD-ready.<\/p>\n\n\n\n<div style=\"height:30px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\">Common mistakes to avoid<\/h2>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h3 class=\"wp-block-heading\">1. Mixing up your income types<\/h3>\n\n\n\n<p class=\"wp-block-paragraph\">One of the biggest slip-ups is treating your CIS and PAYE income the same way. PAYE income is taxed at source by your employer, while CIS income is paid after tax has already been deducted by a contractor. Mixing them up can lead to an incorrect Self Assessment and a smaller refund than you deserve.<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h3 class=\"wp-block-heading\">2. Forgetting to include all PAYE details<\/h3>\n\n\n\n<p class=\"wp-block-paragraph\">If you worked PAYE jobs during the year, always include your <strong>P60s and payslips<\/strong> when you file your tax return. Leaving them out means HMRC can\u2019t see the full picture and that can delay your CIS refund.<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h3 class=\"wp-block-heading\">3. Ignoring CIS over-deductions<\/h3>\n\n\n\n<p class=\"wp-block-paragraph\">Many tradespeople have too much CIS tax taken off their pay. Don\u2019t leave it unclaimed, that\u2019s your money. You can reclaim it through your Self Assessment once the tax year ends.<\/p>\n\n\n\n<div style=\"height:30px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\">How to claim CIS refunds when you also have PAYE<\/h2>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">If you\u2019re <strong>self-employed and also on PAYE<\/strong>, your CIS refund is handled through your Self Assessment. Here\u2019s how it works:<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<ol class=\"wp-block-list\">\n<li>Add your <strong>PAYE income and tax paid<\/strong> (from your P60 or payslips).<\/li>\n\n\n\n<li>Enter your <strong>CIS income and deductions<\/strong> (from your payment statements).<\/li>\n\n\n\n<li>The HMRC system automatically calculates how much tax you\u2019ve already paid and whether you\u2019re due a refund.<\/li>\n<\/ol>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">Your CIS tax deducted throughout the year is offset against your overall tax bill. If too much was taken, HMRC will refund the difference straight to your account after your return is processed.<\/p>\n\n\n\n<div style=\"height:30px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\">Staying compliant with HMRC<\/h2>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">When you earn under both systems, organisation is everything. HMRC expects clear, accurate records that show:<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<ul class=\"wp-block-list\">\n<li>All your <strong>CIS payment and deduction statements<\/strong><\/li>\n\n\n\n<li><strong>Payslips and P60s<\/strong> from your PAYE jobs<\/li>\n\n\n\n<li><strong>Receipts or invoices<\/strong> for your self-employed expenses<\/li>\n\n\n\n<li><strong>Bank statements<\/strong> showing both income sources<\/li>\n<\/ul>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">Keep everything for at least <strong>5 years<\/strong>, and make sure your details match what contractors and employers report to HMRC. Even a small mismatch can hold up your refund.<\/p>\n\n\n\n<div style=\"height:30px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\">When to get help<\/h2>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">Handling CIS and PAYE at the same time can get messy, especially if you\u2019re working for multiple contractors or changing jobs mid-year. A missed deduction or forgotten payslip can easily delay your refund or trigger an HMRC query.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">That\u2019s why many self-employed tradespeople hand the paperwork over to a bookkeeping team that specialises in <strong>CIS and PAYE refunds<\/strong>. They make sure every deduction, payslip, and expense is accounted for, so you get your full refund without the stress.<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\"><strong><a href=\"https:\/\/www.tax2u.co.uk\/get-in-touch\">Talk to a Tax2u CIS Expert<\/a><\/strong> \u2013 we\u2019ll help you claim what you\u2019re owed and keep everything HMRC-compliant.<\/p>\n\n\n\n<div style=\"height:30px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\">FAQs<\/h2>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Can I claim expenses for both CIS and PAYE income?<\/strong><br>yes, you can claim on both but different rules apply about what&#8217;s allowable and what is not.<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Can I offset CIS tax against PAYE?<\/strong><br>No, PAYE and CIS are calculated separately for self-employed workers. PAYE tax is handled by your employer, while CIS tax is reclaimed through your Self Assessment.<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Do I need to file two returns?<\/strong><br>No. You\u2019ll only file <strong>one Self Assessment tax return<\/strong>, but you\u2019ll include both your PAYE and CIS details in it.<\/p>\n\n\n\n<div style=\"height:30px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h2 class=\"wp-block-heading\">Final takeaway<\/h2>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">Working under both PAYE and CIS isn\u2019t a problem as long as your records are clear and complete. The key is to separate your income types, keep every deduction statement and payslip, and file your Self Assessment on time.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">If you\u2019d rather skip the admin, Tax2u can take care of it for you from tracking CIS refunds to keeping your PAYE details accurate.<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p class=\"wp-block-paragraph\"><a href=\"https:\/\/www.tax2u.co.uk\/tax-return\/cis\">Get started with Tax2u\u2019s CIS Refund Service<\/a> \u2013 we\u2019ll handle your PAYE and CIS paperwork, check your deductions, and make sure your refund lands in your account fast.<\/p>\n\n\n\n<hr class=\"wp-block-separator has-alpha-channel-opacity\"\/>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Working under both CIS and PAYE? You\u2019re not alone. Plenty of tradespeople switch between being&#8230;<\/p>\n","protected":false},"author":2,"featured_media":763,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[223,6],"tags":[263,250,248,243,244],"class_list":["post-762","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-cis-tax-rebate-claims","category-self-assessment-income-tax","tag-bookkeeping","tag-cis-tax-rebate","tag-expenses","tag-self-assessment","tag-tax-return"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v26.8 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Combining CIS and PAYE: What you can claim - Tax2u<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/tax2u.co.uk\/blog\/2025\/11\/14\/combining-cis-and-paye-what-you-can-claim\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Combining CIS and PAYE: What you can claim - Tax2u\" \/>\n<meta property=\"og:description\" content=\"Working under both CIS and PAYE? 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